PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009590101.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TALE
Protein Properties Length: 564aa    MW: 63982.6 Da    PI: 8.2701
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009590101.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.84.2e-094835211854
                     HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     +F++  ++yp+ +e++ LA k gLt +qV++WF N R +
  XP_009590101.1 483 MFQNflHPYPKDAEKQLLAVKSGLTRSQVSNWFINARVR 521
                     5887779******************************88 PP

2BELL64.22.8e-21355415364
            BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcL 64 
                     ++ ++kk +L+ ll+ Vd++Y+q+ +++++vis+F+av++l++  +++++Al++iS  +++L
  XP_009590101.1 355 MNSEAKKKHLVALLQVVDDQYNQCLDEIHMVISAFHAVTELNP-SIHARFALQTISSLYKNL 415
                     56799**************************************.9****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.7E-11289425IPR006563POX domain
PfamPF075262.8E-22295415IPR006563POX domain
PROSITE profilePS5007111.224462525IPR001356Homeobox domain
CDDcd000864.88E-11465526No hitNo description
SMARTSM003895.5E-7465529IPR001356Homeobox domain
SuperFamilySSF466891.67E-15467534IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-26468531IPR009057Homeodomain-like
PfamPF059204.1E-15482521IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MAEPHTIIDE NFLHTASIPI SFPDRVGLNN QNHVMDGQNH IMDGHEIPIP FMLQGEAINS  60
SQDFLSLPNF PRAVDTGAIH SVLPMRNRIK EFSLSTSYPI NNAYTEDQYM EGIPISAVSL  120
ANLLATRNAM PENHENLAAL ASLSHPVEGH KTDVLDYPTM LNHSFGSYRN YEFDGVPEIA  180
GTIVGRTGSQ PFQLSHENVN SNTWFSSETA SMNSDSPSGS SSRFSNELSL SLTSTQSGVA  240
CGTTIRDQCS DISCSGVTNH AFPQRRFDSE LTSCNSRNLS LNFGSYKPVH LSQFLTGSRY  300
LRVMQEILSE MAHLSLQNHN LVGYRGNGAE YGANTSFTLS SDDLPDEDRR IIGQMNSEAK  360
KKHLVALLQV VDDQYNQCLD EIHMVISAFH AVTELNPSIH ARFALQTISS LYKNLXGENK  420
QLHTRNGRTF XXRRRKGSRE IXLKHRSFKS NGHFXQLKRK DHQLWRPQRG LPERSVSVLR  480
AWMFQNFLHP YPKDAEKQLL AVKSGLTRSQ VSNWFINARV RLWKPMIEEM YAEMNRRKIR  540
TGNHEDETNN RRNHKIDNRL FTMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_B1e-14471528158Homeobox protein Meis1
4xrs_A1e-14471528158Homeobox protein Meis1
3k2a_B1e-14471529563Homeobox protein Meis2
3k2a_A1e-14471529563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009590101.10.0PREDICTED: LOW QUALITY PROTEIN: homeobox protein ATH1
SwissprotP487318e-92ATH1_ARATH; Homeobox protein ATH1
TrEMBLK4CLC20.0K4CLC2_SOLLC; Uncharacterized protein
STRINGSolyc08g065420.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA82612327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.18e-89homeobox gene 1